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Midbrain neuron

Embryonic v1

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High hierarchy

Neuron

Low hierarchy

Midbrain neuron

Description

neuron in the midbrain

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Curated Markers

INA
GeneCards NCBI Ensembl
RBFOX1
GeneCards NCBI Ensembl
SNAP25
GeneCards NCBI Ensembl

Top Model Markers

NPVF
GeneCards NCBI Ensembl
SNORD3D
GeneCards NCBI Ensembl
XCR1
GeneCards NCBI Ensembl
MIR223HG
GeneCards NCBI Ensembl
IGHV6-1
GeneCards NCBI Ensembl
KLRC4
GeneCards NCBI Ensembl
PGRMC1
GeneCards NCBI Ensembl
GATA3
GeneCards NCBI Ensembl
IGLC6
GeneCards NCBI Ensembl
LCN6
GeneCards NCBI Ensembl

Datasets

Braun et al. 2022
Link

Tissues

  • Brain

Ontology CL:0000540

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About Teichmann Lab in the Cambridge Stem Cell Institute

The Teichmann Lab is based in the Cambridge Stem Cell Institute of the University of Cambridge. The Teichmann lab uses cell-atlasing and cellular genetics to map cells in the human body combining cutting-edge methodologies and computational approaches.

About CellTypist

CellTypist was first developed as a platform for exploring tissue adaptation of cell types using scRNA-seq semi-automatic annotations. Now it's an open source tool for automated cell type annotations as well as a working group in charge of curating models and ontologies.

Citation

If you use any resources or service here, please cite:

Automatic cell-type harmonization and integration across Human Cell Atlas datasets. Cell 186, 5876–5891.e20 (2023). Link

Cross-tissue immune cell analysis reveals tissue-specific features in humans. Science 376, eabl5197 (2022). Link

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Working Group
  • Simone Webb, Laura Jardine (Haniffa Lab)
  • Benjamin Stewart, Kelvin Tuong (Clatworthy Lab)
  • Regina Hoo (Vento-Tormo Lab)
  • Chuan Xu, Cecilia Domínguez Conde, Kylie James, Jongeun Park, Elo Madissoon, Waradon Sungnak, Rasa Elmentaite, Peng He (Teichmann Lab)